Index

B

batch_correction() (in module openimc.core) batch_correction_command() (in module openimc.cli)

build_spatial_graph() (in module openimc.core) build_spatial_graph_anndata() (in module openimc.core)

C

cluster() (in module openimc.core)

cluster_command() (in module openimc.cli) cluster_figures_command() (in module openimc.cli)

D

dataframe_to_anndata() (in module openimc.core)

deconvolution() (in module openimc.core) deconvolution_command() (in module openimc.cli)

E

export_anndata() (in module openimc.core) export_anndata_command() (in module openimc.cli)

extract_features() (in module openimc.core) extract_features_command() (in module openimc.cli)

G

generate_spillover_matrix() (in module openimc.core)

generate_spillover_matrix_command() (in module openimc.cli) get_panel() (in module openimc.core)

L

load_mcd() (in module openimc.core)

M

main() (in module openimc.cli)

module openimc.core

O

openimc.core module

P

parse_denoise_settings() (in module openimc.core) pixel_correlation() (in module openimc.core)

pixel_correlation_command() (in module openimc.cli) preprocess() (in module openimc.core) preprocess_command() (in module openimc.cli)

Q

qc_analysis() (in module openimc.core)

qc_analysis_command() (in module openimc.cli)

S

segment() (in module openimc.core) segment_command() (in module openimc.cli) spatial_anndata_command() (in module openimc.cli) spatial_autocorr_command() (in module openimc.cli) spatial_autocorrelation() (in module openimc.core) spatial_command() (in module openimc.cli) spatial_cooccurrence() (in module openimc.core) spatial_cooccurrence_command() (in module openimc.cli) spatial_distance_command() (in module openimc.cli)

spatial_distance_distribution() (in module openimc.core) spatial_enrichment() (in module openimc.core) spatial_enrichment_command() (in module openimc.cli) spatial_figures_command() (in module openimc.cli) spatial_neighborhood_enrichment() (in module openimc.core) spatial_nhood_enrichment_command() (in module openimc.cli) spatial_ripley() (in module openimc.core) spatial_ripley_command() (in module openimc.cli) spillover_correction() (in module openimc.core) spillover_correction_command() (in module openimc.cli)

W

workflow_command() (in module openimc.cli)