All modules for which code is available

openimc.cli
openimc.core

OpenIMC

Navigation

Getting Started

Overview
Installation
Quick Start

Core Workflow

Image Visualization
Segmentation
Feature Extraction

Data Analysis

Clustering
Clustering Visualizations
LLM-Based Phenotyping
Batch Correction
Quality Control Analysis

Spatial Analysis

Simple Spatial Analysis
Spatial Analysis Visualizations
Advanced Spatial Analysis
Advanced Spatial Analysis Visualizations

Advanced Topics

Pixel Correlation Analysis
Spillover Matrix Generation
High Resolution Experimental Design
Custom Algorithms

Reproducibility & Sharing

State Management and Reproducibility

API Reference

Core pipeline API
CLI API Reference

Related Topics

Documentation overview

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